jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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pip install? #616

Closed AlexandreThibodeauUdM closed 1 year ago

AlexandreThibodeauUdM commented 1 year ago

Hello!

My computer cluster is not using conda for install, but pip. Is there a way to pip install SqueezeMeta or I am forced to clone the git repo?

Thanks!

fpusan commented 1 year ago

No, there is no pip option. Note that you may be able to install miniconda in your home directory and work from there, even if the cluster itself does not have conda installed. You would just need to activate conda and your environment in the bash script you use for launching your works to the queue like in

source /home/user/path/to/miniconda3/bin/activate
conda activate SqueezeMeta
SqueezeMeta.pl ...