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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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How to run run sqm_hmm_reads.pl for fastq? #623

Closed luozhy88 closed 1 year ago

luozhy88 commented 1 year ago

I have some fastq(filtered-fastq) which has been filtered by sqm_mapper.pl.

the input of sqm_hmm_reads.pl require a paired fasta,how can I get a paired fasta?

jtamames commented 1 year ago

There are many programs that can translate fastq into fasta. I use seqtk

luozhy88 commented 1 year ago

Thanks, it works!