search

jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
357 stars 78 forks source link

doublepass post completion #631

Closed sheaster closed 1 year ago

sheaster commented 1 year ago

Hi there, SqueezeMeta is awesome! Is it possible to run the doublepass analysis alone after the pipeline has completed? I would ideally like to analyze the "new" orfs that result. Thanks!

sheaster commented 1 year ago

also, would it be possible to save the raw diamond blastx output?

jtamames commented 1 year ago

It should do it, in the intermediate directory

On 28/2/23 16:33, sheaster wrote:

also, would it be possible to save the raw diamond blastx output?

— Reply to this email directly, view it on GitHub https://github.com/jtamames/SqueezeMeta/issues/631#issuecomment-1448392030, or unsubscribe https://github.com/notifications/unsubscribe-auth/AIIUX7PIM7T5GF46DHFWIH3WZYLETANCNFSM6AAAAAAVIG7HV4. You are receiving this because you are subscribed to this thread.Message ID: @.***>

sheaster commented 1 year ago

ah I see thank you. Is it possible to run the double pass option independently after completion to see what new ORFs are found?

fpusan commented 1 year ago

You can, but you would still need to repeat everything from step 8

sheaster commented 1 year ago

thanks for both responses! appreciate it