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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Unknown option 'restart' when restarting a step #634

Closed jahid10 closed 1 year ago

jahid10 commented 1 year ago

Hi, I faced an error in step 4. I dont know exactly what went wrong, so I tried to restart the run using the following command:

$ SqueezeMeta.pl -p metagenom_run_final --restart

however I get this message from th prompt. Unknown option: restart Usage: SqueezeMeta.pl -m -p -s -f [options]

Am I doing the command wrong?

jtamames commented 1 year ago

Hello

Which version of SqueezeMeta are you using? The flag --restart was introduced in 1.6. If you are using an older version, use the restart.pl script.

Best,

J

On 1/3/23 5:32, jahid10 wrote:

Hi, I faced an error in step 4. I dont know exactly what went wrong, so I tried to restart the run using the following command:

$ SqueezeMeta.pl -p metagenom_run_final --restart

however I get this message from th prompt. Unknown option: restart Usage: SqueezeMeta.pl -m -p -s -f [options]

Am I doing the command wrong?

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jahid10 commented 1 year ago

thanks, it worked with restart.pl