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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Error in subsetORFs #641

Closed da-shanmugapriya closed 1 year ago

da-shanmugapriya commented 1 year ago

To check taxa for particular functions & plot

dop = subsetFun(Input, fun = 'dopamine' , rescale_copy_number = F) plotTaxonomy(dop, 'species', 'percent', N = 10, rescale = F, others = T) plotFunctions(dop, fun_level = 'KEGG',count = 'abund')

Error

Error in subsetORFs(SQM, goodORFs, tax_source = "orfs", trusted_functions_only = trusted_functions_only, : No ORFs were selected. Perhaps the subset query yielded no results?

What does this error mean? How do I overcome this error?

fpusan commented 1 year ago

It means that the substring "dopamine" is not present in the functional annotations of the ORFs in object dop