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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Two -miniden cut-off for same Run #642

Closed drbmanna closed 1 year ago

drbmanna commented 1 year ago

Hi,

I want to use the default -miniden 50 cut-off for the KEGG, COG and Pfam databases. However, I have another external database where I want to impose more strict criteria of -miniden 80. Do I need to perform two separate runs with -miniden 50 and -miniden 80 (restarting at Step 4)? Any better way to accomplish this in a time-saving manner?

Thank you so much. BM.

jtamames commented 1 year ago

Hello

Yes, there is no way to specify different parameters for the different databases. But I will try to implement that in upcoming versions.

Best,

J

On 13/3/23 5:20, B Manna wrote:

Hi,

I want to use the default -miniden 50 cut-off for the KEGG, COG and Pfam databases. However, I have another external database where I want to impose more strict criteria of -miniden 80. Do I need to perform two separate runs with -miniden 50 and -miniden 80 (restarting at Step 4)? Any better way to accomplish this in a time-saving manner?

Thank you so much. BM.

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drbmanna commented 1 year ago

Hi Javier,

Thank you so much. Looking forward to the feature in the future.

Thanks, BM.