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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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SqueezeMeta Takes almost One day at STEP 4 #648

Closed Michaelijesse closed 1 year ago

Michaelijesse commented 1 year ago

I started the SqueezeMeta with image the pipeline is slow at STEP No 4. It took almost one day to run two samples. Kindly tell what should I do to increase the process speed and complete the assembly and annotation. Pls help me. My specification is 32 GB Ram and 8 cores in centos linux.

image

fpusan commented 1 year ago

It is like that, unless you can throw more cores to the problem or increase your RAM memory. I see that SqueezeMeta detected only 11.22 Gb of RAM being free. You say you have 32. Were you running other processes together with SqueezeMeta? That may also be a reason.

fpusan commented 1 year ago

Also, may I ask which CentOS version are you using?

fpusan commented 1 year ago

Closing due to lack of activity, feel free to reopen