fpusan
commented
1 year ago Find which taxa are above 0.1% abundance from the SQM$taxa$phylum$percent and SQM$taxa$genus$percent using basic R. Then pass that vector to plotTaxonomy using the tax parameter.
Depending on how diverse are your samples, you may find that too many taxa are above the 0.1% abundance threshold, so the plot will be quite difficult to follow.
Hello! I am trying to make taxonomy abundance plots of my phyla and genus data from my SQMObject. However, I want to include all the taxa that are above 0.1% abundance. How should I go about doing that? Thanks!