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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Error in dimnames(x) in loadSQM #685

Closed henslerk closed 1 year ago

henslerk commented 1 year ago

Initially, the project would not load due to significant differences in the versions used to run and my SQMtools (the original project was run with v1.3 ) ... I applied versionchange.pl , and the project loaded in R; however, with an error not seen before regarding the dimensions. Now, when I try to make a table with the SQM object (named "test"), it says : Error: object 'test' not found ...

> test <- loadSQM("/data/mcm/khensler/jrivas/MP0311/", engine = 'data.table') Loading total reads; Loading orfs; table... abundances... sequences... taxonomy... Loading contigs table... abundances... Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent In addition: Warning message: In loadSQM("/data/mcm/khensler/jrivas/MP0311/", engine = "data.table") : Your project was created with SqueezeMeta v1.5, while this is SQMtools v1.6.2. You can ignore this message if things are working fine for you, but if you experience any issue consider using the right version of SQMtools for this project

fpusan commented 1 year ago

Hi! Looks similar to #577 and #667

henslerk commented 1 year ago

Thank you!