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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Error from anvi-load-sqm.py #688

Closed weishwu closed 1 year ago

weishwu commented 1 year ago

Hi,

I got an error from anvi-load-sqm.py. What's the solution? Thanks.

anvi-load-sqm.py -p mock -o mock/results/anvio --num-threads 12 --min-contig-length 2500 --run-scg-taxonomy --run-HMMS
WARNING
===============================================
Anvi'o found your FASTA files in place, but not the databases. Now it will
generate all the search databases using the existing FASTA files.

[25 May 23 20:36:07 Creating search databases] Working on Ribosomal_S2 in 12 threads                  

Config Error: Something went wrong and DIAMOND did not create the database file it was
              supposed to for Ribosomal_S2 :(
weishwu commented 1 year ago

It's an Anvi'o issue and I got it solved.

fpusan commented 1 year ago

Good to know. Thanks for reporting!