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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Fresh install of newest version of SqueezeMeta missing almost all python libraries #699

Closed mradz19 closed 1 year ago

mradz19 commented 1 year ago

I did a clean install of the most up to date version of SqueezeMeta according to the install instructions (using mamba). The install walked perfectly but when I tan test_install.pl almost all of the python libraries are missing:

WARNING: Some SqueezeMeta dependencies could not be found in your environment!
        - Missing python library "matplotlib"
        - Missing python library "dendropy"
        - Missing python library "pysam"
        - Missing python library "Bio.Seq"
        - Missing python library "pandas"
        - Missing python library "sklearn"
        - Missing python library "nose"
        - Missing python library "cython"