Can we analyze the fungal function?

jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis

GNU General Public License v3.0

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Can we analyze the fungal function? #721

Closed yjiakang closed 10 months ago

yjiakang commented 10 months ago

Hi developers, thanks for you pipeline. As I know, you wonderful pipeline did not analyze the fungal composition and function. If we want to do that, how should we do? Thanks in advance.

fpusan commented 10 months ago

I would try to annotate the reads directly using sqm_reads.pl or sqm_longreads.pl. That way you avoid problems related to assembly and gene calling on prokaryotic genomes.

yjiakang commented 10 months ago

oooh, thanks.