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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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itol #778

Closed HannahBenisty closed 2 months ago

HannahBenisty commented 5 months ago

Hola!

I am trying to generate files for iTOL but I obtain the following errors, do you how I could solve it? Thanks!

sqm2itol.pl -completion 40 -functions /users/rg/hbenisty/LK3B022B_SG/09_obs/function.txt /users/rg/hbenisty/LK3B022B_SG/09_obs

_Reading bins in /nfs/users/rg/hbenisty/LK3B022B_SG/09_obs/results/18.09_obs.bintable... Found bins Working with bins with more than 40% completion and less than 100% contamination Using RPKM values Reading requested functions from /users/rg/hbenisty/LK3B022B_SG/09_obs/function.txt Reading functions in /nfs/users/rg/hbenisty/LK3B022B_SG/09_obs/results/21.09obs.metacyc.pathways Died at /users/rg/hbenisty/miniconda3/envs/SqueezeMeta/bin/sqm2itol.pl line 147.

fpusan commented 4 months ago

Sorry for the late answer, this is probably related to #798

fpusan commented 2 months ago

Closing due to lack of activity, feel free to reopen