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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Installation Error #784

Closed RM9717 closed 2 months ago

RM9717 commented 5 months ago

Hi There is an issue when trying to install the SqueezeMeta pipeline directly. This issue also occurred when trying to install the databases using the commands SQMinstallationerror

I changed where "/download/path is the destination folder. This is the recommended option, but the files are hosted in our institutional server, which can at times be unreachable", as stated in section 3 of the SqueezeMeta Github in downloading and building db, where no host can be reached.

Is there a way to bypass this problem?

fpusan commented 5 months ago

download_databases.pl should be working for you (our server is reachable at the moment, at least from Sweden where I'm located) If this persists, maybe it has to do with your firewall configuration? You can try to run directly wget andes.cnb.csic.es/SqueezeMeta/SqueezeMetaDB.tar.gz... does this download the file for you?

RM9717 commented 5 months ago

connection Up to 15 retries, still no success

jtamames commented 5 months ago

I can assure that the server in andes.cnb.csic.es is up and working correctly. As @fpusan says, could it be that you are behind a firewall? Best, J

fpusan commented 2 months ago

Closing due to lack of activity, feel free to reopen