Some SqueezeMeta dependencies could not be found

[Manso002]

Hello. I am trying to use SQMtools for the first time but i cant install it, i have tried everything. I run /home/meridian/miniconda3/envs/SqueezeMeta/SqueezeMeta/utils/install_utils/test_install.pl and get the following message:

WARNING: Some SqueezeMeta dependencies could not be found in your environment or failed to execute!

• Missing R library "doMC"
• Missing R library "ggplot2"
• Missing R library "data.table"
• Missing R library "reshape2"
• Missing R library "pathview"
• Missing R library "DASTool"
• Missing R library "SQMtools"

I tried to install them using sudo R and everything worked except pathview and SQMtools. Based on others issues (#258), i tried running configure_nodb.pl after succesfully installing some packages with sudo R but i keep getting the same message when running test_install.pl

Thanks in advance. Greetings

[fpusan]

You shouldn't be needing sudo for this. Are you using out conda package for installation?

[Manso002]

Thanks for the fast response. Yes, I am using conda package for installation and working under squeezemeta environment.

[fpusan]

Try creating an environment from scratch without sudo. What is your OS distribution and version?

[Manso002]

That was the problem! I created a new enviroment without sudo and everything works fine. Thanks a lot.

[fpusan]

Glad to hear! Closing issue