search

jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
346 stars 81 forks source link

anvi-filter-sqm.py Config Error #806

Closed DioufMouss0 closed 3 months ago

DioufMouss0 commented 4 months ago

Hello Professor, I am trying to use the anvi-filter-sqm.py for filtering and vizualize with anvio but I am having thi serror (picture attached).

could you please help with this.

thanks

Screenshot from 2024-03-04 09-28-28

fpusan commented 4 months ago

What version of anvi'o are you using? Is anvi-self-test working ok?

DioufMouss0 commented 4 months ago

I am using anvio 8 yes anvi-self-test is working (attached picture) Screenshot from 2024-03-04 11-13-43

fpusan commented 4 months ago

Try using anvio7, sqm2anvio is not compatible with anvio8

DioufMouss0 commented 3 months ago

Working now thanks

fpusan commented 3 months ago

Glad to hear, closing issue!