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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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How to set the output path of the Sequential mode? #816

Closed Bellallalli closed 2 months ago

Bellallalli commented 3 months ago

Hello Professor, I have a question looking forward to your reply! I want to know how to set the output path of the result if I select Sequential mode? I want to save the results to the specified folder.

When I set -p /path/, it says： Please DO NOT specify project name in sequential mode. The name will be read from the samples in the samples file /data/F-MB0308.samples

fpusan commented 3 months ago

You can't do that at the moment. The subprojects will be created in the directory from which you launch SqueezeMeta.

Bellallalli commented 3 months ago

You can't do that at the moment. The subprojects will be created in the directory from which you launch SqueezeMeta.

Ok, I see. Thank you for your reply. I'd like you to look at it for me. This is my .samples file. I want to know their gene abundance and species annotation information, should the analysis mode be Sequential mode or Coassembly mode?

choose
fpusan commented 3 months ago

Both will do the same since you only have one sample. Coassembly will allow you to use -p to control the output directory

fpusan commented 2 months ago

Closing due to lack of activity, feel free to reopen