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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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SQM for genomics #817

Closed inej90 closed 1 month ago

inej90 commented 3 months ago

Dear Javier,

I would like to know if I can use SQM also for genomic analysis. If so, do I need to choose any specific tool to do it.

Thank you in advance.

jtamames commented 2 months ago

Hello Sorry for my late response. The SqueezeMeta suite has a script for annotating genomes. It is named sqm_annot.pl Could that suit your needs? Best, J

inej90 commented 2 months ago

Hello,

This is actually what I was looking for. So to launch the analysis on genomes, just by using this script we can obtain results?

Thank you for your response.

jtamames commented 2 months ago

Yes. It does the same than SqueezeMeta, but for sets of sequences, including genomes. It skips the binning steps (nosense if just trying to annotate a bunch of genomic sequences) Best, J

inej90 commented 2 months ago

Great. Thank you for your answer.