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jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis
GNU General Public License v3.0
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Died at /root/micromamba/envs/SqueezeMeta/bin/SqueezeMeta.pl line 239 #827

Closed Cathernis closed 1 month ago

Cathernis commented 2 months ago

Hi,

I keep getting an error of "Died at /root/micromamba/envs/SqueezeMeta/bin/SqueezeMeta.pl line 239" when running " nohup SqueezeMeta.pl -s datatable.txt -f /home/liqiqi/1/ -p clamfoot -m merged -t 48 -canumem 500 &" any ideas what is going wrong there? I am out of ideas, thank you.

jtamames commented 2 months ago

Hello Could you share all the needed info with us, please? Syslog file, output files, etc

Cathernis commented 2 months ago

rstudio-export.zip

Cathernis commented 2 months ago

1713175666788

Cathernis commented 2 months ago

The data analysed were downloaded from a public database. I don't know how to do it

fpusan commented 2 months ago

Could it be that the output directory clamfoot already exists? If so you need to delete it before running SqueezeMeta again.

jtamames commented 2 months ago

Simply reading the nohup.out file, you find the following: Project name /home/liqiqi/1/clamfoot already exists. Please remove it or change the project name Could that be your problem?

fpusan commented 1 month ago

Closing due to lack of activity, feel free to reopen