How to combine the results analized by 'sequential mode'

jtamames / SqueezeMeta

A complete pipeline for metagenomic analysis

GNU General Public License v3.0

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How to combine the results analized by 'sequential mode' #852

Open mingxues2024 opened 2 weeks ago

mingxues2024 commented 2 weeks ago

I have got the results from sequential mode for per sample. Is there any other tool in squeezemeta .pl to summarize the results of all samples?

jtamames commented 2 weeks ago

No, there is not

fpusan commented 2 weeks ago

If what you mean is to get tables summarizing the taxonomic/functional composition of all your samples, you can use the utils/combine-sqm-tables.py script, or by loading each project individually in SQMtools and using the combineSQMlite function.