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jtleek / protocols

This will be a directory of lab analysis protocols.
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Minor fixes, DE analysis from BigWigs, gene-level counts from BigWigs #9

Closed lcolladotor closed 9 years ago

lcolladotor commented 9 years ago

Fix typo on main page, header level, leekgroup_repo is about doing an analysis and not about protocols

lcolladotor commented 9 years ago

@jtleek The latest commit https://github.com/lcolladotor/protocols/commit/0af830ee959aa32bff8da2676c5997467b48dff0 includes a protocol for reading coverage data in BigWig files and creating a count matrix. The protocol uses a small data set which is perfect for showing how it can be done. Although for large data sets, users are encouraged to use functions from derfinder.

lcolladotor commented 9 years ago

@jtleek The commit https://github.com/lcolladotor/protocols/commit/c99987289a1377fea2e77f05865abe5986352780 adds a short protocol for creating gene-level count matrices from BigWig files.