It seems the dotplots generated from clean_windows() has the right X and Y axis label but wrong axis title (subject and query swapped).
my command is as follows:
p <- clean_windows(wd =wd, nCores = 16, faFiles = c("genome1.fa", "genome2.fa", "genome3.fa"))
It seems the dotplots generated from clean_windows() has the right X and Y axis label but wrong axis title (subject and query swapped). my command is as follows: p <- clean_windows(wd =wd, nCores = 16, faFiles = c("genome1.fa", "genome2.fa", "genome3.fa"))
The version of minimap2 I use is 2.24