installation error

[ofedrigo]

I get this error message while installing:

`devtools::install_github("jtlovell/GENESPACE") Downloading GitHub repo jtlovell/GENESPACE@HEAD Skipping 1 packages not available: Biostrings ── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────────────── ✔ checking for file ‘/tmp/RtmpslNqYf/remotes8f8e35e1b8090/jtlovell-GENESPACE-893f902/DESCRIPTION’ ... ─ preparing ‘GENESPACE’: ✔ checking DESCRIPTION meta-information ... ─ checking for LF line-endings in source and make files and shell scripts ─ checking for empty or unneeded directories ─ building ‘GENESPACE_1.3.1.tar.gz’

Installing package into ‘/usr/local/lib/R/site-library’ (as ‘lib’ is unspecified)

• installing source package ‘GENESPACE’ ... using staged installation R ** byte-compile and prepare package for lazy loading Error: object ‘seqinfo’ is not exported by 'namespace:Biostrings' Execution halted ERROR: lazy loading failed for package ‘GENESPACE’
• removing ‘/usr/local/lib/R/site-library/GENESPACE’ Warning message: In i.p(...) : installation of package ‘/tmp/RtmpslNqYf/file8f8e34e3fa8bc/GENESPACE_1.3.1.tar.gz’ had non-zero exit status`

all dependencies seem to be properly installed. This is what I did:

install.packages("devtools") install.packages("BiocManager") BiocManager::install(c("Biostrings", "rtracklayer")) devtools::install_github("jtlovell/GENESPACE")

Thanks,

Olivier

[jtlovell]

I'm not sure - its saying you don't have a valid "Biostrings" install. Can you confirm that this is the case?