Error in if (is.na(gsParam$synteny$hogs)) { : argument is of length zero. when checking orthofinder

jtlovell / GENESPACE

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Error in if (is.na(gsParam$synteny$hogs)) { : argument is of length zero. when checking orthofinder #139

Closed cieohsc closed 7 months ago

cieohsc commented 7 months ago

Hi, I'm running genespace using an existing orthofinder but it seems like it's having an issue when checking the results. Could you possibly help this?

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Running orthofinder (or parsing existing results) Checking for existing orthofinder results ... ... found existing run, not re-running orthofinder Error in if (is.na(gsParam$synteny$hogs)) { : argument is of length zero.

cieohsc commented 7 months ago

Sorry, I looked at the closed cases and followed someone's advice to delete everything and rerun. it worked somehow.