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jtlovell / GENESPACE

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Error in strsplit(id, ",") at step 2 #156

Open daniilprigozhin opened 4 months ago

daniilprigozhin commented 4 months ago

Step 1 concludes normally, then step 2 fails. Not sure how to troubleshoot this:

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  1. Running orthofinder (or parsing existing results) Checking for existing orthofinder results ... [1] FALSE ... found existing run, not re-running orthofinder re-ordering genomeIDs by the species tree: ...

############################

  1. Combining and annotating bed files w/ OGs and tandem array info ... Error in strsplit(id, ",") : non-character argument
jtlovell commented 2 months ago

hmm. Not sure ... did you produce your /bed and /peptide files with parse_annotations or manually? If the latter, perhaps there is something up with the gene IDs?