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GENESPACE
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Memory usage error v1.1.4
#71
peterinnes
closed
1 year ago
2
Step 3 of run_genespace: Item 1 of input is not a data.frame, data.table or list
#70
KaneLab
closed
1 year ago
3
Trouble finding MCScanX
#69
amruta0306
closed
1 year ago
1
Error: In max(hcBlk$rnd1) : no non-missing arguments to max; returning -Inf
#68
timregan
closed
1 year ago
3
ploidy question
#67
dabitz
closed
1 year ago
2
Location of the Collinearity files
#66
sanyalab
closed
1 year ago
3
Inverting intergenomic files and blast error
#65
jdobry-lab
closed
1 year ago
6
Building pan-genome annotations and riparian plots v1.0.7
#64
matthewwdavis
closed
1 year ago
3
Advice on diverged genomes and paralogy
#63
theo-allnutt-bioinformatics
closed
1 year ago
2
Chromosomes scaled by gene rank order explanation
#62
theo-allnutt-bioinformatics
closed
1 year ago
2
Trouble parsing gff
#61
theo-allnutt-bioinformatics
closed
1 year ago
1
Clarify 'integer string'
#60
theo-allnutt-bioinformatics
closed
1 year ago
2
Custom ordering of chromosomes
#59
Neato-Nick
closed
1 year ago
9
Flagging synteny error
#58
Botantisty
closed
1 year ago
13
MCScanX installation
#57
shyunchoi
closed
1 year ago
2
NCBI gff parsing error
#56
SwiftSeal
closed
1 year ago
2
error in synteny flagging at v1.0.4
#55
TkNiw
closed
1 year ago
7
run_orthofinder
#54
AbirUl12
closed
1 year ago
8
parsing annotations from Ensembl
#53
hellebaa
closed
1 year ago
3
Cannot invert chromosomes in riparian plot
#52
dinahparker
closed
1 year ago
5
Cannot find orthofinder
#51
hellebaa
closed
1 year ago
5
Error with small regions of interest
#50
epacht
closed
1 year ago
4
Parse_annotations() error subscript out of bounds
#49
trm76056
closed
1 year ago
13
Error in flagging synteny for each pair of genomes
#48
austintdaigle
closed
1 year ago
3
Some warnings messages and no results
#47
a-velt
closed
1 year ago
2
Error in check_ploidyOgMatch
#46
adam-ryan-97
closed
1 year ago
5
Orthofinder error in v1.0.0 dev version
#45
aamirwkhan06
closed
1 year ago
8
Forcing chromosome order
#44
aberaslop
closed
1 year ago
2
non-syntenic chromosomes in the plot
#43
aberaslop
closed
1 year ago
2
Error at pan-genome stage
#42
Jeremias-Brand
closed
1 year ago
2
zlib data.table issue in parse_annotations
#41
fayweili
closed
1 year ago
2
Different colors for chromosomes in plot_riparianHits()
#40
aamirwkhan06
closed
2 years ago
3
ERROR: Blast0_0.txt is corrupted
#39
Tdanis
closed
2 years ago
2
Error in run_orthofinder
#38
zmz1988
closed
2 years ago
2
usage of outgroup
#37
xiaoyezao
closed
2 years ago
2
Error running syntenty
#36
noor-albader
closed
2 years ago
7
The figure not show like synteny blocks from syntenicBlocks
#35
Chenglin20170390
closed
2 years ago
1
Error at the synteny step when running the example dataset.
#34
MartinLaforest
closed
2 years ago
2
gff error
#33
madhubioinfo
closed
2 years ago
5
Does inversion regions are more divengent than synteny region ?
#32
Chenglin20170390
closed
2 years ago
1
Output explanation
#31
sanyalab
closed
1 year ago
9
diamond Error running example data
#30
xieduo7
closed
2 years ago
3
error in Combining synteny-constrained and inblock orthogroups ...
#29
xiaoyezao
closed
2 years ago
5
Paleopolyploidy
#28
xiaoyezao
closed
2 years ago
9
Error when using outgroup during pangenome step
#27
niederhuth
closed
2 years ago
6
adding/removing genomes
#26
xiaoyezao
closed
2 years ago
1
inversion breakpoint identification
#25
Chenglin20170390
closed
2 years ago
5
Interpretation of output files Dotplots-Riparian plots
#24
alexvasilikop
closed
2 years ago
4
issue in synteny()
#23
DrPintoThe2nd
closed
2 years ago
8
The error for "pangenome" step
#22
zhangzhiyangcs
closed
2 years ago
4
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