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jts / mbtools

MIT License
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probability-threshold not taking inputs #2

Open femiliani opened 1 year ago

femiliani commented 1 year ago

Hello all, thanks for the great tool it helped us solve a conversion that modbam2bed failed to handle.

That being said I have run into a little issue. When i try to set the probability-threshold option with reference-frequency i can't seem to get it take effect and it stays at 0.8. I have tried with a file to make sure that the number of called bases remains the same regardless of what i set -t as.

Thanks again for the great tool.

-Francesco

AlbatrosHurleur commented 1 month ago

Hello,

I am facing the same issue as OP, it seems that the "-t" option of "region-frequency" is not enforced. Would it be possible to have a look at this issue?

Thanks for this great tool too!