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jts / nanocorrect

Experimental pipeline for correcting nanopore reads
MIT License
39 stars 10 forks source link

Use blosum80 supplied with the nanocorrect #6

Closed alexjironkin closed 9 years ago

alexjironkin commented 9 years ago

Currently the BLOSUM80 file is expected to be in the current working directory. However, when analysis is done from different directory it's missing and poa fails. The error is gobbled up by DEVNULL. Instead, workout a path of the nanocorrect.py file and use blosum80 file found in that directory.

alexjironkin commented 9 years ago

I have added the check for a local blosum file, before fall back to the one in the repo.

jts commented 9 years ago

Looks good, thanks for this.