After the latest update to the pdf report I keep getting a key error for missing the lineage_notes key. For the moment I've gotten it to work by checking out to the commit before this change (01e044b3e56ef2460abf93cf7d475072df23f078).
Error:
rule make_report_tex:
input: qc_reports/nml_summary_qc.tsv, lineages/nml_pangolin_version.txt, plots/nml_tree_snps.pdf
output: qc_reports/nml.tex
jobid: 2
wildcards: prefix=nml
Traceback (most recent call last):
File "/ncov-tools/workflow/rules/../scripts/generate_report.py", line 355, in <module>
write_summary_qc_section()
File "/ncov-tools/workflow/rules/../scripts/generate_report.py", line 274, in write_summary_qc_section
tsv_to_table(args.summary_qc_table.format(run_name=args.run_name), tf)
File "/ncov-tools/workflow/rules/../scripts/generate_report.py", line 95, in tsv_to_table
del row[k]
KeyError: 'lineage_notes'
Let me know if I've missed anything to easily solve this!
Hi everyone,
After the latest update to the pdf report I keep getting a key error for missing the
lineage_notes
key. For the moment I've gotten it to work by checking out to the commit before this change (01e044b3e56ef2460abf93cf7d475072df23f078).Error:
Let me know if I've missed anything to easily solve this!
Thanks, Darian