Add reference indexing, support different primer name prefixes

jts / ncov-tools

Small collection of tools for performing quality control on coronavirus sequencing data and genomes

MIT License

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Add reference indexing, support different primer name prefixes #91

Closed rdeborja closed 3 years ago

rdeborja commented 3 years ago

Added support for different primer name prefix identified in ARTIC V4 primer scheme. Adds a rule to create a reference genome index file if it does not already exist. Requires ncov-parser update 0.6.9.

jts commented 3 years ago

Looks good!