How can I know the final coverage for each contig in the assembly?

jts / sga

de novo sequence assembler using string graphs

http://genome.cshlp.org/content/22/3/549

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How can I know the final coverage for each contig in the assembly? #111

Open rotoli opened 8 years ago

rotoli commented 8 years ago

Hello! I know that SPADES gives the depth of coverage of each contig in contigs' headers, but I do not know how to get this information in SGA, could anyone help me? I used SGA trial version in BaseSpace. Thank you.

Regards