update samtools sort cmd

jts / sga

de novo sequence assembler using string graphs

http://genome.cshlp.org/content/22/3/549

237 stars 82 forks source link

update samtools sort cmd #112

Closed grh closed 8 years ago

grh commented 8 years ago

Kept getting an error when trying to execute sga-align and sga-bam2de.pl for the "samtools sort" command: it wanted the -o and -T options...adjusted them in the manner indicated and seemed to work out fine.