search

jts / sga

de novo sequence assembler using string graphs
http://genome.cshlp.org/content/22/3/549
239 stars 82 forks source link

fastq files produced by 'sga correct' not always match the length of the reads #129

Open mictadlo opened 8 years ago

mictadlo commented 8 years ago

Hi, Here is mention:

You should keep in mind that the fastq files will be converted to .fasta after the overlap correction (which, by default, is on) because the quality values in the .fastq file produced by 'sga correct' not always match the length of the reads if insertions/deletions were corrected (newer versions of sga may solve this issue).

Does the problem has been resolved in the newer SGA version?

Thank you in advance.

Best wishes,

Mic