search

jts / sga

de novo sequence assembler using string graphs
http://genome.cshlp.org/content/22/3/549
237 stars 82 forks source link

GCC-6: WARNING unordered_map: present but cannot be compiled #133

Open ppericard opened 7 years ago

ppericard commented 7 years ago

Hi, I am trying to compile SGA with gcc 6.2.0 on a debian system. I encountered a few kinks with the bamtools library until I checked out the very last version which repaired support with gcc 6. And then I compiled SGA using gcc 6. The compilation terminated with no error, but there is 2 warnings that seemed surprising and needed to be reported:

configure: WARNING: unordered_map: present but cannot be compiled configure: WARNING: unordered_map: check for missing prerequisite headers? configure: WARNING: unordered_map: see the Autoconf documentation configure: WARNING: unordered_map: section "Present But Cannot Be Compiled" configure: WARNING: unordered_map: proceeding with the compiler's result configure: WARNING: ## -------------------------------- ## configure: WARNING: ## Report this to js18@sanger.ac.uk ## configure: WARNING: ## -------------------------------- ##

configure: WARNING: unordered_set: present but cannot be compiled configure: WARNING: unordered_set: check for missing prerequisite headers? configure: WARNING: unordered_set: see the Autoconf documentation configure: WARNING: unordered_set: section "Present But Cannot Be Compiled" configure: WARNING: unordered_set: proceeding with the compiler's result configure: WARNING: ## -------------------------------- ## configure: WARNING: ## Report this to js18@sanger.ac.uk ## configure: WARNING: ## -------------------------------- ##

The full compiling log is attached here: sga_compile.txt

jts commented 7 years ago

Thanks - I'll look into resolving these warnings.