Like PR #123, use samtools >=1 `sort` format in sga-align script

jts / sga

de novo sequence assembler using string graphs

http://genome.cshlp.org/content/22/3/549

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Like PR #123, use samtools >=1 `sort` format in sga-align script #150

Closed kastman closed 6 years ago

kastman commented 6 years ago

Small fix for samtools sort in sga-align, which allows for using newer samtools (anything 1.0 or greater).

This way both sga-align and sga-bam2de.pl are in line with the samtools api, and you don't need to switch between samtools versions to use them (or use sga <= 0.10.14).