How to query occurrences of a sequence in sai and rsai ?

jts / sga

de novo sequence assembler using string graphs

http://genome.cshlp.org/content/22/3/549

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How to query occurrences of a sequence in sai and rsai ? #157

Open kounkou opened 5 years ago

kounkou commented 5 years ago

Hello @luizirber @drio @kastman @hyphaltip @idot

How to query occurrences of a sequence in .sai and .rsai files please ? I assume a search function featuring a binary search should be available to search for sequences in the Suffix Array

Regards