jts / sga

de novo sequence assembler using string graphs
http://genome.cshlp.org/content/22/3/549
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index for large .fastq file #161

Open sunsac opened 4 years ago

sunsac commented 4 years ago

I am trying to index a large .fastq file (~700GB) by nohup sga index -a ropebwt --no-reverse -t 6 -vvv TT2.fastq &, however, the job in the server disappeared suddenly without any returned files, or sometimes it just returned a .bwt.tmp file only. Is it because the .fastq file too large for my server to handle or did miss anything before indexing ? Thank you very much