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jts / sga

de novo sequence assembler using string graphs
http://genome.cshlp.org/content/22/3/549
237 stars 82 forks source link

Does not compile with most recent g++ #51

Closed Legogris closed 10 years ago

Legogris commented 11 years ago

Some warnings treated as errors made this not compile on Arch Linux 64-bit with the most recent version of gcc. In the generated configure-file on line 195, changing AM_CXXFLAGS = -Wall -Wextra -Werror -Wno-unknown-pragmas to AM_CXXFLAGS = -Wall -Wextra -Werror -Wno-unknown-pragmas -Wno-maybe-uninitialized -Wno-unused-local-typedefs

fixes this.

jts commented 11 years ago

Hi Robert,

Thanks for the report, can you list your version of gcc and the error logs, if you still have them?

Cheers, Jared

On Thu, Jul 4, 2013 at 7:18 AM, Robert Edström notifications@github.comwrote:

Some warnings treated as errors made this not compile on Arch Linux 64-bit with the most recent version of gcc. In the generated configure-file on line 195, changing AM_CXXFLAGS = -Wall -Wextra -Werror -Wno-unknown-pragmas to AM_CXXFLAGS = -Wall -Wextra -Werror -Wno-unknown-pragmas -Wno-maybe-uninitialized -Wno-unused-local-typedefs

fixes this.

— Reply to this email directly or view it on GitHubhttps://github.com/jts/sga/issues/51 .

Legogris commented 11 years ago

Sorry, I don't have the error logs left - I might recompile tomorrow so I can give them to you. gcc is 4.8.1. FWIW I didn't have this problem on my RedHat box with a similar setup and gcc version 4.4.6.

jts commented 10 years ago

Closing, please re-open if this is still an issue