sga-preqc-report.py corrupted output file.

jts / sga

de novo sequence assembler using string graphs

http://genome.cshlp.org/content/22/3/549

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sga-preqc-report.py corrupted output file. #97

Closed kumarsaurabh20 closed 8 years ago

kumarsaurabh20 commented 8 years ago

I am trying to get the genome size estimated using sga-preqc workflow. I have successfully generated .preqc file. But when I use sga-preqc-report.py script to generate a report, the resulting pdf file I get is always corrupted. It cannot be opened. Do you have any idea how to get around this issue?

Many thanks for your time.

Best regards, Kumar

jts commented 8 years ago

Hi Kumar,

Do you get any errors from the sga preqc or sga-preqc-report.py steps? Can you send me the .preqc file?

Jared

jts commented 8 years ago

Closed after discussion on email.