Open fraimondo opened 2 years ago
In get_chromosomes_from_ensebml https://github.com/juaml/hipsnp/blob/76963bfa47164baa2afaf41c55a0b72763c36578/hipsnp/hipsnp.py#L634
get_chromosomes_from_ensebml
Problem: We currently do one request per RSID and parse the json in a not-so-good way.
We can improve this method by:
1- Using a combined request to ensembl.org REST API. 2- Checking the json response properly.
Todo:
variation/human/
In
get_chromosomes_from_ensebml
https://github.com/juaml/hipsnp/blob/76963bfa47164baa2afaf41c55a0b72763c36578/hipsnp/hipsnp.py#L634Problem: We currently do one request per RSID and parse the json in a not-so-good way.
We can improve this method by:
1- Using a combined request to ensembl.org REST API. 2- Checking the json response properly.
Todo:
variation/human/
(https://rest.ensembl.org/documentation/info/variation_id) for a POST request to (https://rest.ensembl.org/documentation/info/variation_post)