[CI]: Improve CI

[synchon]

The CI is acting up due to AFNI tests failing (ReHo and (f)ALFF) and FSL not being installed correctly. Although the latter is being avoided now, the former is not and thus coverage is not being reported. We need to come up with a flexible solution to handle situations like this.

[github-actions[bot]]

PR Preview Action v1.4.7 :---: Preview removed because the pull request was closed. 2024-06-21 09:17 UTC

[codecov[bot]]

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 86.64%. Comparing base (b890e54) to head (8d0956c).

Additional details and impacted files

[](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) ```diff @@ Coverage Diff @@ ## main #318 +/- ## ============================================ - Coverage 100.00% 86.64% -13.36% ============================================ Files 1 114 +113 Lines 1 5137 +5136 Branches 0 999 +999 ============================================ + Hits 1 4451 +4450 - Misses 0 528 +528 - Partials 0 158 +158 ``` | [Flag](https://app.codecov.io/gh/juaml/junifer/pull/318/flags?src=pr&el=flags&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [docs](https://app.codecov.io/gh/juaml/junifer/pull/318/flags?src=pr&el=flag&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | `100.00% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#carryforward-flags-in-the-pull-request-comment) to find out more. | [Files](https://app.codecov.io/gh/juaml/junifer/pull/318?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml) | Coverage Δ | | |---|---|---| | [junifer/markers/brainprint.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fmarkers%2Fbrainprint.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9tYXJrZXJzL2JyYWlucHJpbnQucHk=) | `40.94% <100.00%> (ø)` | | | [junifer/markers/falff/\_afni\_falff.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fmarkers%2Ffalff%2F_afni_falff.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9tYXJrZXJzL2ZhbGZmL19hZm5pX2ZhbGZmLnB5) | `37.83% <ø> (ø)` | | | [junifer/markers/reho/\_afni\_reho.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fmarkers%2Freho%2F_afni_reho.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9tYXJrZXJzL3JlaG8vX2FmbmlfcmVoby5weQ==) | `35.89% <ø> (ø)` | | | [junifer/pipeline/pipeline\_step\_mixin.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fpipeline%2Fpipeline_step_mixin.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9waXBlbGluZS9waXBlbGluZV9zdGVwX21peGluLnB5) | `97.72% <100.00%> (ø)` | | | [junifer/preprocess/smoothing/\_afni\_smoothing.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Fpreprocess%2Fsmoothing%2F_afni_smoothing.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci9wcmVwcm9jZXNzL3Ntb290aGluZy9fYWZuaV9zbW9vdGhpbmcucHk=) | `39.13% <ø> (ø)` | | | [junifer/utils/logging.py](https://app.codecov.io/gh/juaml/junifer/pull/318?src=pr&el=tree&filepath=junifer%2Futils%2Flogging.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml#diff-anVuaWZlci91dGlscy9sb2dnaW5nLnB5) | `72.00% <100.00%> (ø)` | | ... and [107 files with indirect coverage changes](https://app.codecov.io/gh/juaml/junifer/pull/318/indirect-changes?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=juaml)