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juanbot / CoExpNets

Co-expression network management based on WGCNA + k-means
Apache License 2.0
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Getting genes from module #13

Closed juanbot closed 4 years ago

juanbot commented 5 years ago

In the typical view of a module, when you select it from the module column, you get, as an example for the module yellow green, this form

imagen

It would be good to add a button that says "Get gene list"

This would call

getMM(which.one=which.one,tissue=tissue, genes=getGenesFromModule(tissue=tissue,which.one=which.one,module=module))\ and it would return a data frame that you can convert into an excel.

juanbot commented 5 years ago

Hi Sonia, how is it going with this? It would be good to have it soon.

SoniaRuiz commented 4 years ago

Hi Juan,

Sorry for the delay in this issue.

I have updated CoExp Test environment with a new version including the 'Get Gene List' button. This is the result: image

Is this resolution what you were thinking about?? PS: it downloads an excel sheet with the gene list.

Regards, Sonia

juanbot commented 4 years ago

Sonia, I was referring not to when you analise a set of genes (in your case SNCA). I was referring to the time where you click (see my first message) on "yellowgreen". It will give you the whole set of genes from the yellowgreen module. Therefore, the button shouldn't be in the window you say Do you get it?

SoniaRuiz commented 4 years ago

Hi,

I have uploaded a new CoExp Testing version on which I have placed the 'Get Gene List' button within the 'Network Catalog' tab:

image

Is that what you were thinking?