CI part & separating R and Python dependencies

zbakhm commented 6 months ago

CI part configuration:

added workflows tests-with-R.yaml and tests-without-R.yaml to run tests with or without R packages, while ignoring R-dependent tests if R packages are not installed (tests-without-R.yaml)
I added a save-packages-R.yaml workflow to save R packages in the cache, so you don't have to install them every time you run a test (tests-with-R.yaml will take less time to run).

Separation of R and Python dependencies, by displaying warnings, in the case where a function that depends on an R package is run and R or the package are not installed. The warning asks you to install R if this is not the case and/or install the relevant R package if this is not the case.

bthirion commented 6 months ago

Thx ! Can you address the failing tests ?

brash6 commented 6 months ago

@zbakhm is this PR ready to be merged ?

zbakhm commented 6 months ago

@zbakhm is this PR ready to be merged ?

Yes!

judithabk6 / med_bench

CI part & separating R and Python dependencies #73