Can you provide example data to run your package. I am facing these errors on my files:
2023-02-24 14:01:56,807 - main - Arguments parsed. Starting...
2023-02-24 14:01:56,807 - main - [WARNING] blastx program not found !!! This may cause problems later on.
2023-02-24 14:01:56,807 - main - [WARNING] svm-train program not found !!! This may cause problems later on.
2023-02-24 14:01:56,807 - main - [WARNING] svm-scale program not found !!! This may cause problems later on.
2023-02-24 14:01:56,807 - main - [WARNING] svm-predict program not found !!! This may cause problems later on.
2023-02-24 14:01:56,808 - parseBlast - Parsing blast results
I am running on 4 core x 32 GB linux. Terminal is killed after 25 minutes. I checked that all the above are installed in the same environment and they are.
The version of the package I am using is: psytrans 2.0.0 bioconda
Can you provide example data to run your package. I am facing these errors on my files:
2023-02-24 14:01:56,807 - main - Arguments parsed. Starting... 2023-02-24 14:01:56,807 - main - [WARNING] blastx program not found !!! This may cause problems later on. 2023-02-24 14:01:56,807 - main - [WARNING] svm-train program not found !!! This may cause problems later on. 2023-02-24 14:01:56,807 - main - [WARNING] svm-scale program not found !!! This may cause problems later on. 2023-02-24 14:01:56,807 - main - [WARNING] svm-predict program not found !!! This may cause problems later on. 2023-02-24 14:01:56,808 - parseBlast - Parsing blast results
I am running on 4 core x 32 GB linux. Terminal is killed after 25 minutes. I checked that all the above are installed in the same environment and they are.
The version of the package I am using is: psytrans 2.0.0 bioconda
Here is the code I am running:
python ~/.conda/envs/psytrans_env/bin/psytrans.py ~/Cyphastrea_metagenome.scaffolds.fasta -b ~/BLAST_db/species1species2_blastResults.txt -t ~/tmp -p 4 -v
Thanks!