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juglab
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DenoiSeg
Joint training of denoising and segmentation.
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Threshold TypingError in example notebook
#51
lezra1
opened
3 months ago
2
Cannot predict using FIJI `org.tensorflow.framework.TensorInfo" missing method "hasName`"
#50
wyldescience
closed
1 year ago
1
Numpy1.15
#49
jdeschamps
closed
1 year ago
0
Error upon running Mouse_Organoid_Cells_CBG_Example.ipynb
#48
rhoitink
closed
1 year ago
2
3d example
#47
jdeschamps
closed
2 years ago
0
augmentation compatible with channel
#46
jdeschamps
closed
2 years ago
0
One-hot encoding not compatible with channels
#45
jdeschamps
closed
2 years ago
1
ImportError: csbdeep only supports tensorflow < 2 for now (installed tensorflow version: 2.3.0)
#44
Mrc010
closed
2 years ago
2
First epoch takes too long
#43
jdeschamps
opened
2 years ago
0
Segmentation board unavailable
#42
jdeschamps
opened
2 years ago
0
Dataset size vs bactch x steps / epoch
#41
jdeschamps
opened
2 years ago
0
TF2
#40
jdeschamps
closed
2 years ago
3
Masking per pixel instead of per patch
#39
jdeschamps
opened
3 years ago
1
Add support for multi-channel inputs
#38
funkey
closed
2 years ago
0
Incompatible keras and h5py versions
#37
funkey
opened
3 years ago
0
Conda install instructions seem to require conda-forge
#36
funkey
closed
3 years ago
0
Transfer Learning
#35
hylin-work
closed
3 years ago
1
Add notebooks with improved quality
#34
mangalp
closed
4 years ago
4
Update page
#33
tibuch
closed
4 years ago
0
Refactoring
#32
tibuch
closed
4 years ago
0
Mouse notebook
#31
mangalp
closed
4 years ago
1
Modified DSB notebook and added Flywing notebook
#30
mangalp
closed
4 years ago
2
Update notebook to generate qualitative results
#29
mangalp
closed
4 years ago
1
Upload full denoising table for wiki
#28
mangalp
closed
4 years ago
0
Supplementary
#27
mangalp
closed
4 years ago
0
Refactor figure notebooks
#26
tibuch
closed
4 years ago
1
Update figures
#25
tibuch
closed
4 years ago
0
Add qualitative figure notebook
#24
tibuch
closed
4 years ago
0
Add P_i to x-axis label
#23
tibuch
closed
4 years ago
0
Updated abstract
#22
mangalp
closed
4 years ago
0
Denoising quantification notebook
#21
mangalp
closed
4 years ago
0
Mansucript Figure 3
#20
tibuch
closed
4 years ago
0
Mansucript fig alpha scheduling
#19
tibuch
closed
4 years ago
0
Add figure notebooks for DSB n20
#18
tibuch
closed
4 years ago
0
Add seg-denoise-ratio monitor
#17
tibuch
closed
4 years ago
0
Alpha scheduling
#16
tibuch
closed
4 years ago
0
Add notebooks for data preparartion of flywing and liver datasets
#15
mangalp
closed
4 years ago
0
Add val-seg-loss monitoring evaluation notebook
#14
tibuch
closed
4 years ago
0
Add DSB n0 manuscript figure plots
#13
tibuch
closed
4 years ago
0
Monitor seg loss
#12
tibuch
closed
4 years ago
0
Manuscript-Figures: DSB n10
#11
tibuch
closed
4 years ago
0
Notebook
#10
tibuch
closed
4 years ago
0
Change loss to: (1 - weight) * seg + weight * denoise
#9
tibuch
closed
4 years ago
0
Add weighted denoising evaluation notebook
#8
tibuch
closed
4 years ago
0
Alpha weighted loss
#7
mangalp
closed
4 years ago
0
Save scores on validation data
#6
mangalp
closed
4 years ago
0
Computing and saving scores on validation data
#5
mangalp
closed
4 years ago
0
Simple Evaluation Notebooks
#4
tibuch
closed
4 years ago
0
Remove early stopping
#3
tibuch
closed
4 years ago
0
Add SEG score optimized with AP-Threshold
#2
tibuch
closed
4 years ago
0
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