This PR includes the joint code for 2d and 3d example datasets.
The following changes were made since release v0.1.0_tag:
Added example notebooks for Mouse-Organoid-Cells-CBG dataset, which is one of four 3d datasets we report results on. (All data is available as assets to release v0.1.0_tag, for example one can download the data for Mouse-Organoid-Cells-CBG by clicking here)
This PR includes the joint code for 2d and 3d example datasets.
The following changes were made since release
v0.1.0_tag:Mouse-Organoid-Cells-CBGdataset, which is one of four 3d datasets we report results on. (All data is available as assets to releasev0.1.0_tag, for example one can download the data forMouse-Organoid-Cells-CBGby clicking here)branched_erfnet_3d.py,erfnet_3d.pywhich define the model architecture with 3d convolutionstrain.pyandtest.pyto have separate methods for handling2dand3ddataitkwidgetspypi package for visualizing 3d volumes in03-predict.ipynb