IMOD version needs to be updated

lokke-cuit commented 2 years ago

Only 4.12.9 through 4.12.17 are available now but the script tries to download 4.10.52 `+ mkdir /imod

wget -P /imod https://bio3d.colorado.edu/ftp/latestIMOD/RHEL6-64_CUDA8.0/imod_4.10.52_RHEL6-64_CUDA8.0.sh --2022-03-07 20:35:34-- https://bio3d.colorado.edu/ftp/latestIMOD/RHEL6-64_CUDA8.0/imod_4.10.52_RHEL6-64_CUDA8.0.sh Resolving bio3d.colorado.edu (bio3d.colorado.edu)... 128.138.72.88 Connecting to bio3d.colorado.edu (bio3d.colorado.edu)|128.138.72.88|:443... connected. HTTP request sent, awaiting response... 404 Not Found 2022-03-07 20:35:34 ERROR 404: Not Found.

FATAL: While performing build: while running engine: exit status 8 `

zehrea commented 2 years ago

I have the same issue. IMOD 4.10 is not available for downloads and I cannot use cryoCARE

Elena

tibuch commented 2 years ago

Hello @lokke-cuit and @zehrea,

You could change the download link in the script to the newest version that you want to use.

Regarding the cryoCARE core code I would recommed to use this implementation: https://github.com/juglab/cryoCARE_pip

It is more memory efficient that this one and only focuses on the denoising functionality and not the tomographic reconstruction.

Best wishes, Tim-Oliver

juglab / cryoCARE_T2T