I'm running cryoCARE without using singularity. I have to update several paths in the notebooks for /data and the MotionCor2 binaries (as expected). However, I also run into File-not-found errors in the reconstruct_tomo call of 02_Tomogram_Reconstruction. I'm using a relative path, so some filepaths are no longer correct after the initial os.chdir call.
I'm running cryoCARE without using singularity. I have to update several paths in the notebooks for /data and the MotionCor2 binaries (as expected). However, I also run into File-not-found errors in the
reconstruct_tomocall of 02_Tomogram_Reconstruction. I'm using a relative path, so some filepaths are no longer correct after the initialos.chdircall.I am preparing a PR with the fix.