Closed thorstenwagner closed 2 years ago
Hi,
Thank you for reporting!
I think the issue originates from here. Instead of writing the prediction into the provided output it is returned :frowning:
Best, Tim-Oliver
Ah, interesting! Thanks for the hint! I think it should be straight forward to fix it? I just need to have a look on format of the output volume. Or do you know off the top of your head how to fix it?
Unfortunately not. Maybe this works? But I would have to dig a bit to understand again what I did there :sweat_smile:
Alright, analyzed the problem a bit using a tiny test sample:
Provided output shape is: (104, 232, 232, 1)
pred
shape is: (104, 232, 232, 1)
I will try a fix ^^
The fix works for me. If you are fine with it, I would merge it.
Looks good to me, please go ahead.
Thanks for checking! I merged it. I close this issue.
Hi,
when I run cryoCARE on my local setup, it typically crashes with a OOM error and then tries n_tiles (1,1, 2) and runs through. The results look fine :-)
If I run the same cryoCARE setup on our cluster with RTX6000 GPUs it only produces a black volume. However, if you set n_tiles to (1,1,2) in the prediction config, it works well.
So, there seems to be bug when running it only on a single tile. Any ideas @tibuch ?
Best, Thorsten