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juglab / cryoCARE_pip

PIP package of cryoCARE
BSD 3-Clause "New" or "Revised" License
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Illegal instruction (core dumped) error during preparation step #21

Closed wjnicol closed 1 year ago

wjnicol commented 2 years ago

Hello,

After creating the conda environment and the .json file as indicated, when I run the cryoCARE_extract_train_data.py --conf train_data_config.json command, I get an Illegal instruction (core dumped) error.

What does that mean. I tried modifying the parameters but did not work. This is the content of the json file:

{ "even": [ "../pol7-4_lam1_ts2_fSIRT.rec" ], "odd": [ "../pol7-4_lam1_ts4_fSIRT.rec" ], "patch_shape": [ 72, 72, 72 ], "num_slices": 200, "split": 0.9, "tilt_axis": "Y", "n_normalization_samples": 100, "path": "./" }

The tomograms are 1022 x 1444 x 500 pixels

thorstenwagner commented 2 years ago

Hm, when you upload the data somewhere, we could try to reproduce it...

thorstenwagner commented 1 year ago

No reaction